Hi GvG,
as I went through the drill myself:
Adaptation reset is usually done with engine cold.
After adaptation reset is done run the engine at idle until warm (80 or 90 deg Celsius - or fan turns on if watercooled).
Since I do not know which bike you refer to - this is the procedure for the F650 (single, FI model)
If you reset adaptation values - upon success - the GS 911 software will guide you trough the process.
HTH
Jan