I don't think it really matters whether the motor is running or not.
What is really essential is ESA suspension. I somehow don't think that the 2006 has ESA fitted. AFAIK ESA was only fitted from 2007.
You can easily determine whether you have it fitted by lifting the seat and inspecting the rear shock. Do you have the servo motor attached to the shock or not? If not, you have the standard suspension and no ESA calibration is possible.
Post an Autoscan, which will also reveal whether it's fitted or not.