TPS change does require the engine adaptions to be reset - stupidly written under Finishing Work - having told you not to both earlier
As for your other faults - plug in you GS911 head to the DME (engine), and look at live values for your CAT sensors and the trim adaptions with it running
if the CAT voltages aren't wobbling about between 200 and 700mV on both pot all the time and you have one set of adaptions running way different to the other Pot - I suspect one of your CAT sensors has died
the opposite pot is then told to run way to rich and the bike runs like a pig - don't believe you should have error messages - they can have, but I have three popped CAT sensors all of which don't throw error codes that MotoScan or GS911 can find
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